MagE Pipeline Command-Line Arguments

Documentation of command-line arguments.

Note: objects in CAPS are fields the user must supply.

magedb -d DATADIR [options...]

-d DATADIR	directory of data
-gz	option for gzipped fits files

Directory with fits files.
```
magedb -d /data1/example/directory
```
Directory with gzipped fits files.
```
magedb -d /data1/example/directory -gz
```

magesetup -db DATABASE TARGET(S) [options...]

magesetup -db DATABASE -all [options...]

-all	generates pipelines for all targets
-db DATABASE	database file
-flatkey FLATSTRING	string to search for flat frames in database file
-flat FLAT	location to a specific flat frame
-fringe FRINGE	location to a specific fringe frame
-fringekey FRINGESTRING	string to search for fringe frames in database file
-individual	separate extractions
-lampkey LAMPSTRING	string to search for lamp frames in database file
-lamp LAMP	location to a specific lamp frame
-logb	option bins extracted spectra logarithmically in wavelength
-mk MAKEFILE	creates a makefile for multiple targets
-noslitfn	option skips the generation and usage of a slit function
-orderkey ORDERSTRING	string to search for order frames in database file
-slitfnkey SLITFNSTRING	string to search for slit function frames
-slit SLIT	location to a specific slit frame

MagE setup generating pipeline for ngc3201-e1.
```
magesetup -db directory.db ngc3201-e1
```
MagE setup generating pipelines for all targets in the database directory.
```
magesetup -db directory.db -all
```
MagE setup generating pipelines for all targets in the database directory and creating a Makefile.
```
magesetup -db directory.db -all -mk Makefile
```

MagE setup generating pipelines for specific flatkey, orderkey, fringekey and lampkey.

magesetup -db directory.db -flatkey quartzflatw_milky -orderkey quartzflatw_omilky 
-fringekey dome -lampkey thar -all

Resources